PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000518G0720
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family M-type_MADS
Protein Properties Length: 77aa    MW: 8905.31 Da    PI: 10.7957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000518G0720genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.22.1e-231059250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                     rie+  +rqv+f+kRr+g+lKKAeEL vLCda+va+++fs+ +g+l+ ++
  PH01000518G0720 10 RIEERGRRQVSFAKRRKGLLKKAEELAVLCDAQVALLVFSPfDGNLQHFP 59
                     8***************************************9789999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-24160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.32149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-22368IPR002100Transcription factor, MADS-box
CDDcd001202.77E-24359No hitNo description
PRINTSPR004041.4E-19323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-211058IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-192338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-193859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MVRGRVELRR IEERGRRQVS FAKRRKGLLK KAEELAVLCD AQVALLVFSP FDGNLQHFPE  60
LSTQASYDWN VKDFRK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003564959.14e-21PREDICTED: truncated transcription factor CAULIFLOWER D
SwissprotQ9XJ606e-20MAD50_ORYSJ; MADS-box transcription factor 50
TrEMBLI1HUQ44e-21I1HUQ4_BRADI; MADS-box transcription factor 40
STRINGBRADI2G59187.11e-20(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-20AGAMOUS-like 79